CDS

Accession Number TCMCG006C121791
gbkey CDS
Protein Id XP_013641106.1
Location join(2817550..2817816,2817957..2818229,2818295..2818474,2818581..2818844,2818947..2819079,2819171..2819261,2819362..2819464,2819813..2819916,2820004..2820097,2820299..2820454,2820535..2820597,2820699..2820764,2820998..2821198,2821295..2821372,2821461..2821580,2821724..2821804,2821915..2822000,2822228..2822309,2822409..2822888)
Gene LOC106346353
GeneID 106346353
Organism Brassica napus

Protein

Length 973aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013785652.2
Definition vacuolar protein sorting-associated protein 41 homolog [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category U
Description Clathrin heavy chain repeat homology
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko04131        [VIEW IN KEGG]
KEGG_ko ko:K20184        [VIEW IN KEGG]
EC -
KEGG_Pathway ko04138        [VIEW IN KEGG]
map04138        [VIEW IN KEGG]
GOs GO:0003674        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005768        [VIEW IN EMBL-EBI]
GO:0005770        [VIEW IN EMBL-EBI]
GO:0006605        [VIEW IN EMBL-EBI]
GO:0006623        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007033        [VIEW IN EMBL-EBI]
GO:0007034        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009606        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009629        [VIEW IN EMBL-EBI]
GO:0009630        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0030897        [VIEW IN EMBL-EBI]
GO:0031338        [VIEW IN EMBL-EBI]
GO:0031410        [VIEW IN EMBL-EBI]
GO:0031982        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033263        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0035542        [VIEW IN EMBL-EBI]
GO:0042144        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043254        [VIEW IN EMBL-EBI]
GO:0044087        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044425        [VIEW IN EMBL-EBI]
GO:0044433        [VIEW IN EMBL-EBI]
GO:0044440        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0048284        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051020        [VIEW IN EMBL-EBI]
GO:0051049        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0060627        [VIEW IN EMBL-EBI]
GO:0061024        [VIEW IN EMBL-EBI]
GO:0061025        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0072665        [VIEW IN EMBL-EBI]
GO:0072666        [VIEW IN EMBL-EBI]
GO:0097576        [VIEW IN EMBL-EBI]
GO:0097708        [VIEW IN EMBL-EBI]
GO:0098796        [VIEW IN EMBL-EBI]
GO:0099023        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGCTTCGCTTCCGTCTGAAAACGGCGTTGACGGAGATGACGAAAGGGAGGAGGAGGAAGATGAAGAAGAAGAAGAAGAAGAGGAAGAAGAGAACGGAGAAGAAGAGGGCGAGGAGGAGCCGCGTCTCAAGTACCAGCGTATGGGAGGAAACGTACCTTCCTTGCTATCCAACGACGCTGCTTCCTGCATCGCCGTTGCCGCGAGGATGATCGCTCTCGGTACTCACGACGGAACGGTTCACATCCTCGATTTCCTCGGGAATCAGGTGAAAGAGTTTCGGGCGCACACGGCCCCGGTTAATGATCTAAGCTTTGACACTGAGGGAGAGTATATCGGAAGCTGTTCAGACGATGGCTCTGTTGTTATAAACAGCCTTTTCACTGATGACGAGAAGTTGAGGTTTGATTACCATCGCCCCATGAAGGCTATTTCCTTGGATCCGGATTACACCAAGAAGCAGTCGAAGAGATTTGTAGCTGGTGGTTTGGCTGGTCATTTGTATATGAACTCGAAGAAGTGGTTTGGTTATAAAGATCAGGTGCTGCATTCTGGGGAAGGTCCAATCCATTCTGTGAAATGGAGAGGAAGTCTCATCGCCTGGGCTAATGATACTGGTGTTAAAGTTTATGATACAGCCAAAGATCAGCGTGTTACTTTTATTGAAAGACCTCGAGGAAGCCCCCGGCCTGAGGCTTTGCTTCCCCACTTGGTTTGGCAGGATGACACTCTTCTTGTGATTGGTTGGGGAACATCTGTTAAAATTGCTTCAATTAAATCAGACCAGCAAAAACCAGCATATGGAACATATAGGCAGGTTCAGATGTCTAGTCTAAACCAAGTGGACATTGTGGCATCGTTCCAAACTAGCTATTTCATTTCAGGGATTGCTCCCTTTGGTGATTCTCTAGTTATTCTTGCATATATACCCACCGAAGAAGATGGTGTGAAAGAAATTAGCAGCACCACTACTCTATCTCGTCAGGGAAATGCCCAGAGGCCTGAAGTACGCATTGTATCATGGAACAGTGATGAACTTACAATGGATGCTCTTCCGGTACATGGATTTGAGCATTACAAGGCGAAAGACTATTCCCTTGCTCATGCTCCATTCCCAGGTAGTAGCTATGCTGGGGGGCAGTGGGCGGCTGGTGATGAACCACTGTACTATATCGTGTCTCCAAAGGATGTTGTGATTGCAAAACCCAGGGACGCTGAAGATCACATTAACTGGCTTTTGCAACATGGATTCCACGAGAAAGCACTAGCAGCTGTTGAGGCTGGTGAAGGACGAAACGAACTAATTGATAAGGTGGGTGCTGGGTATCTTGATCATTTGATTGTGGAAAGAAAATATGCTGAAGCAGCATCTTTGTGCCCAAAATTGTTACGAGGATCTGCTTCAGCCTGGGAGAGGTGGGTTTTCCATTTTGCTCAATTACGCCAGCTGCCTGTGCTTGTTCCATACATGCCTACCGATAACCCAAGGCTCAAGGATACTGTCTACGAGGTTGCTCTAGTGGCACTGGCAACAAACCCCTCATACCATAAGGAGCTTTTGTCCACTGTTAAATCTTGGCCACGTTCAGTATATTCTGCTTTGCCTGTTATCTCAGCAATAGAGCCTCAGCTGAACACATCTTCAATGACCGATGCCCTCAAAGAGGCGCTGGCAGAGCTGTATGTTATTGATGGACAGCACGAGAAAGCCTTCGCCCTATATGCTGATCTTCTCAAACCAGAAGTGTTCGACTTCATTGAGAAATACAACTTGCATGAGGCGATTCGTGGAAAGGTTGTCCAGGTAATGCTGCTTGATTGCAAGCGTGCCACTGCCTTGTTTATCCAAAACAGGGATTTGATTGCTCCATCTGAAGTGGTCCCACAACTTTTGAAAGCTGGCAAGAAATGTGATTCAAGATATTACTTGTACTTATATCTGCATGCGTTATTTCAAGTCAGTCCAGATGGTGGGAAGGATTATCATGATATGCAGGTAGAACTATATGCGGAATACGATACTAAAATGCTGCTTCCATTCCTACGTAGCAGTCAACATTACAAGTTAGAAAAGGCATATGAACTTTGTGTCAAGAAAGATCTACTAAGAGAGCAAGTTTTTGTTCTGGGAAGGATGGGAAATGCAAAACAAGCTCTTGCTGTCATCATAAATAAACTGGGGGATATAGAGGAGGCTGTGGAATTTGTGTCCATGCAGCACGACGATGATCTCTGGGAAGAACTGATAAAACAATGTCTGAACAAGCCCGAGATGGTGGGCTTGCTGTTGGAGCACACGGTTGGCAACCTTGACCCTCTTTACATAGTCAATATGGTTCCAAATGGCTTGGAAATACCTCGATTAAGGGATCGATTGGTCAAAATCGTGACAGATTACAGAACCGAGACATCTCTAAGACACGGTTGTAATGACATTCTCAAGACGGACATTGTGAATCTTCTGGTCAAGTGCTTCAACGAGGCGAGACGTGGGGTCTGCCTAAGCAACGAAGAAGACGATTCCCGTGGAAAGAGAGAAGACAACGATCGATCGATCTCACAGAGAATGGTAGTAGATAAATCATTGAGCATTAAGATGACAGAGGTGAAGTCGAAGACGCGGGGGGACACACGTTGTTGCATGTGCTTCGACCCGGTATCGATAAGAGGGGACACGGTGGTGGTCTTCTTTTGCTGTCATGCTTACCACATGACATGTCTCATGGATGCTGCCTTCAGCGACAGCAACAACAAGACAGCAGCTAAAGGTTCTTCCGGGTATGGATACGGCTATGATAACGGTGTGGAGGAGGAAGATAGTGAGGATGATGAAGAAGATGATAGTAATGATGGAGACAGGTCTGTCAGGTCGCGATTGCGGTGCATATTATGTACTACTGCCGCTGCTGCGTCCGCTCGGTAG
Protein:  
MASLPSENGVDGDDEREEEEDEEEEEEEEEENGEEEGEEEPRLKYQRMGGNVPSLLSNDAASCIAVAARMIALGTHDGTVHILDFLGNQVKEFRAHTAPVNDLSFDTEGEYIGSCSDDGSVVINSLFTDDEKLRFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGYKDQVLHSGEGPIHSVKWRGSLIAWANDTGVKVYDTAKDQRVTFIERPRGSPRPEALLPHLVWQDDTLLVIGWGTSVKIASIKSDQQKPAYGTYRQVQMSSLNQVDIVASFQTSYFISGIAPFGDSLVILAYIPTEEDGVKEISSTTTLSRQGNAQRPEVRIVSWNSDELTMDALPVHGFEHYKAKDYSLAHAPFPGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDAEDHINWLLQHGFHEKALAAVEAGEGRNELIDKVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLRQLPVLVPYMPTDNPRLKDTVYEVALVALATNPSYHKELLSTVKSWPRSVYSALPVISAIEPQLNTSSMTDALKEALAELYVIDGQHEKAFALYADLLKPEVFDFIEKYNLHEAIRGKVVQVMLLDCKRATALFIQNRDLIAPSEVVPQLLKAGKKCDSRYYLYLYLHALFQVSPDGGKDYHDMQVELYAEYDTKMLLPFLRSSQHYKLEKAYELCVKKDLLREQVFVLGRMGNAKQALAVIINKLGDIEEAVEFVSMQHDDDLWEELIKQCLNKPEMVGLLLEHTVGNLDPLYIVNMVPNGLEIPRLRDRLVKIVTDYRTETSLRHGCNDILKTDIVNLLVKCFNEARRGVCLSNEEDDSRGKREDNDRSISQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHAYHMTCLMDAAFSDSNNKTAAKGSSGYGYGYDNGVEEEDSEDDEEDDSNDGDRSVRSRLRCILCTTAAAASAR